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Can we remove pytabix dependency?

Status: Open.

#223 In Clinical-Genomics/genmod;

· fellen31 opened on Jul 14, 2026

Update uv.lock

Status: Open.

#221 In Clinical-Genomics/genmod;

· dnil opened on Jul 3, 2026

Docs deployment automation deprecation

Status: Open.

#220 In Clinical-Genomics/genmod;

· dnil opened on Jul 3, 2026

Unstable sorting compared to e.g. bcftools sort for variants that share chrom and pos

Status: Open.

#214 In Clinical-Genomics/genmod;

· fellen31 opened on Jul 2, 2026

genmod models silently drops SVs with non-symbolic ALT values

Status: Open.

#213 In Clinical-Genomics/genmod;

· fellen31 opened on Jul 2, 2026

Instructions for creating a new release of genmod

Status: Open.

#209 In Clinical-Genomics/genmod;

· fellen31 opened on Jun 29, 2026

Document which criteria is chosen when two criteria have the same value for lower and upper

Documentation

Status: Open.

#206 In Clinical-Genomics/genmod;

· fellen31 opened on May 20, 2026

Document that genmod can parse most severe consequences correctly

Documentation

Status: Open.

#205 In Clinical-Genomics/genmod;

· fellen31 opened on Apr 30, 2026

ValueError: ('Failed to normalize to within expected bounds', 0.0, 3.0, 9.0, 3.0) in genmod compound

bug

Status: Open.

#204 In Clinical-Genomics/genmod;

· fellen31 opened on Apr 29, 2026

Digenic inheritance patterns

enhancement

intermediate

Status: Open.

Feature

#203 In Clinical-Genomics/genmod;

· dnil opened on Mar 26, 2026

Genmod (models) hangs forever on error

bug

Status: Open.

#193 In Clinical-Genomics/genmod;

· fellen31 opened on Mar 9, 2026

Docker image improvements: Scout score is low

Status: Open.

#187 In Clinical-Genomics/genmod;

· dnil opened on Dec 17, 2025