EMC-Viroscience
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Repositories
- illumina-metagenomic-analysis-manual Public
This is a manual for viral metagenomic data analysis of Illumina short reads
- nanopore-amplicon-analysis-manual Public
This is a manual for viral amplicon data analysis of Nanopore long reads
- bird-surveillance-dashboard Public
Source code for the bird surveillance dashboard based on the Pathogen Portal data.
- Genomic-monitoring-mpox-in-Burundi Public Forked from BOM86/Genomic-monitoring-mpox-in-Burundi
Genomic monitoring and tracking of mpox virus Clade Ib after the introduction into Burundi at the end of July until mid-September, 2024
- Worp_etal_Global_Sewage_Virome Public Forked from nathalieworp/Worp_etal_Global_Sewage_Virome
snakemake workflow and scripts for global urban virome wastewater study (Manuscript in submission Worp et al, 2025)
- USUV_submission Public Forked from divprasad/USUV_submission
Usutu virus submission made easy—this structured template is designed for programmatically submitting raw read samples, runs, and experiment metadata to ENA. Converts tables to XML, supports adding or modifying metadata, retrieves submission receipts, and includes metadata accessions.
- updated_illumina_workflow Public Forked from divprasad/updated_illumina_workflow
A Snakemake workflow for processing Illumina sequencing data, tested and validated on wastewater metagenomics.
- Rashidi_et_al-2024-COVID19-brain-apoptosis Public Forked from HerpeslabNL/Rashidi_et_al-2024-COVID19-brain-apoptosis
Scripts and Data for Rashidi et al 2024 Manuscript
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